Contact



Welcome to the COCONUT system!

Do you want to download results of COCONUT search or analysis?




Please send us an application email to coconut@biosoft.kaist.ac.kr
Please tell us your name, email address, institution, department, and position.
We will review your application and authorize you to download your search results.


COCONUT Analysis Report


Analysis report is a customizable document that shows the user’s query on the possible relationships
between components under the “Herb-Compound-Gene-Phenotype” schema.
Users can choose a desired scheme for the report by selecting the appropriate modules enlisted below.


How can I receive my analysis report?


1. Download the analysis report application form. ( KOR ) / ( ENG )

2. Fill in the necessary information, and send it to coconut@biosoft.kaist.ac.kr



People


   Prof. Doheon Lee

Professor of Department of Bio and Brain Engineering, KAIST
Director of Bio-Synergy National Research Project, Department of Bio and Brain Engineering, KAIST

  291 Daehak-ro(373-1 Guseong-dong), Yuseong-gu,      Daejeon 305-701, Republic of Korea
  +82-42-350-4316
  dhlee@kaist.ac.kr

   Seunghwan Jung, PhD Candidate

Bio-information System Laboratory, Department of Bio and Brain Engineering, KAIST


  291 Daehak-ro(373-1 Guseong-dong), Yuseong-gu,      Daejeon 305-701, Republic of Korea
  +82-42-350-4353
  sktoyo@kaist.ac.kr



Available Modules


M02 Given Herb-of-interest

  • M0201: Search for compounds in the herb.
  • M0202: Search for phenotypes that are associated with the herb.
  • M0203: Inquire into genes that are associated with the compounds in the herb.
  • M0204: Inquire into phenotypes that are associated with the compounds in the herb.
  • M0205: Explore CODA network to seek for phenotypes potentially affected by the herb.
    •

    M03 Given Compound-of-Interest

  • M0301: Search for herbs that contain the compound.
  • M0302: Search for herbs that contain the combination of compounds.
  • M0303: Search for genes that are associated with the compound.
  • M0304: Search for phenotypes that are associated with the genes affected by the compound.
  • M0305: Inquire into phenotypes that are associated with the genes affected by the compound.
  • M0306: Explore CODA network to seek for phenotypes potentially affected by the compound.
    •

    M04 Given Gene-of-Interest

  • M0401: Search for phenotypes that are associated with the gene.
  • M0402: Explore CODA network to seek for phenotypes potentially affected by the gene.
  • M0403: Search for compounds that are associated with the gene.
  • M0404: Inquire into herbs that contain the compounds associated with the gene.
    •

    M05 Given Phenotype-of-Interest

  • M0501: Search for genes that are associated with the phenotype
  • M0502: Search for compounds that are associated with the phenotype.
  • M0503: Search for combinations of compounds that are associated with the phenotype.
  • M0504: Search for herbs that are associated with the phenotype.
  • M0505: Inquire into compounds that affect the genes associated with the phenotype
  • M0506: Inquire into herbs that contain the compounds associated with the phenotype
    •

    M06 Given start-point and end-point, explore the possible paths in CODA network

  • M0601: Explore CODA network to find path from the herb to the gene.
  • M0602: Explore CODA network to find path from the herb to the phenotype.
  • M0603: Explore CODA network to find path from the compound to the gene.
  • M0604: Explore CODA network to find path from the compound to the phenotype.
  • M0605: Explore CODA network to find path from the gene(start point) to the gene(end point)
  • M0606: Explore CODA network to find path from the gene to the phenotype.
  • M0607: Extract sub-network related to specific keyword, from CODA network.
    •